PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015248
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 225aa    MW: 24921.4 Da    PI: 10.2566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.7e-12145222283
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  fkv ++  +l+++ +++p +f ++++++k+   +l +   +g +W vk+     +++ +  ++++GWk+F++an Lk gD ++F+
  Lus10015248 145 FKVVMSRAYLSKSFVTIPVEFHKHINEDKA---ELWV---EGLRWGVKIANytvSGYAR-KIISTGWKSFANANSLKRGDACIFE 222
                  57777777788888*******988876754...4664...5688888883334344444.57889*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.387154IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-41854IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-13137222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-11138222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-10143222No hitNo description
PROSITE profilePS5086311.702144224IPR003340B3 DNA binding domain
PfamPF023621.3E-9145222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNRNRRKQQS LKPQLGGAFA RDNGLKIGDV CAFEVPRKGE TEKPTLNVVI FRADQGVDRD  60
VHPPVDIQPK SAVLLSDREG AEACSSHGFR NVPNEAKLTI DKRSLTVKPC DKDRSGNLRK  120
QSNRILQSHG GLEAANAFTS DLPLFKVVMS RAYLSKSFVT IPVEFHKHIN EDKAELWVEG  180
LRWGVKIANY TVSGYARKII STGWKSFANA NSLKRGDACI FESL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100152481e-166(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-08B3 family protein