PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014911
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 416aa    MW: 46669.7 Da    PI: 5.1884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014911genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.93.1e-17541251081
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                  +deel+++yL kk++g+ l++ + i +v++y+++P++   k    +e+ewyfF++rd+ky++g+r+nra+ +g
  Lus10014911  54 EDEELINQYLIKKISGQALPT-NKIVDVNLYQYNPETVVeKYRPCGEREWYFFTPRDRKYKNGERPNRAAGDG 125
                  59*******************.77**************8334445899********************98877 PP
2NAM24.85.9e-08126152104128
          NAM 104 ktLvfykg..rapkgektdWvmheyrl 128
                  k Lvfy+g  ++++g kt+W+mheyr+
  Lus10014911 126 KALVFYRGkqQKQDGIKTNWIMHEYRV 152
                  89****7632667789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.83245183IPR003441NAC domain
PfamPF023657.8E-1254152IPR003441NAC domain
SuperFamilySSF1019412.09E-3155183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MESPASPPKK RATVQISSAS SVPELAAGSS SSITPAPANT AAVLPNDELE EPEEDEELIN  60
QYLIKKISGQ ALPTNKIVDV NLYQYNPETV VEKYRPCGER EWYFFTPRDR KYKNGERPNR  120
AAGDGKALVF YRGKQQKQDG IKTNWIMHEY RVNPSTVESL PRVSRGDDDM RLDDYVLCRI  180
YRKPGKSCDY KQPQKRENNC TAADADADAD ASLQQPDDHV SEPATSSVNH SCQTSHHPVA  240
MDTGMESDSK RPPHSENSDD NFSLHLPDPE AGMRSSNHGC QTDFLMAMES DCRQPPDREP  300
FCWNSLNHGY QQTVHPMAMA DGTSSLLQHP YSHLHHALPT ISSYLPMDPM AMADASSLRR  360
SSYYPPTEAL RPLDDFNSMW KIPYGLGPDP LVNFESEWIH DDDKVDPFAH PMSKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-325518325168Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713PKKRATV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014911
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100149110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.19e-33NAC family protein