PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26884.7 Da PI: 7.444 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 102 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ +L +H + H Lus10014794 102 WQCGYCKKSFRAEKYLDQHFDSmH 125 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.912 | 102 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEKFLPSAVI LLLASTFFSQ ALCQEVGEIG GDRITEKQSV HEHQVHCSRE RSRAAWKIIE 60 EYLMPFVEQE RYQIPTNCRL HPSNDLFRDQ EQHKINYDFN QWQCGYCKKS FRAEKYLDQH 120 FDSMHFDLLN FTDSRCLADI CGALHCDSVM DSKSVKKIRC NPAAASKNHH LCESLADSCF 180 PLILGRSAAG LHDLFLRQFC DALTCKGKKK LFPKGGKVSF NDNLQPFGID NQVGT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014794 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592985.1 | 1e-107 | uncharacterized protein LOC110600431 isoform X1 | ||||
TrEMBL | A0A2C9UJ37 | 1e-105 | A0A2C9UJ37_MANES; Uncharacterized protein | ||||
STRING | Lus10014794 | 1e-177 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3216 | 13 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-81 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10014794 |