PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 19671.6 Da PI: 9.1514 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 29 | 73 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR++i +++ L+el+P+ + K + a++L + v+Y+k L Lus10014726 29 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 73 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.70E-11 | 22 | 78 | No hit | No description |
SuperFamily | SSF47459 | 1.23E-15 | 22 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.132 | 24 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 26 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 29 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-11 | 30 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MPSSVPAAPQ PPAMRPRVRA RRGQATDPHS IAERLRREKI AERIRALQEL VPSVNKTDRA 60 AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEDENGEG GRNQPAWEKW 120 SNDGTEKQVA KLMEENVGAA MQFLQSKALC IMPISLASAI YHTQSQDPPS IVKPEANPPS 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014726 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898025.1 | 1e-117 | transcription factor UNE12 isoform X2 | ||||
Swissprot | O22768 | 3e-94 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2I4DYZ2 | 1e-113 | A0A2I4DYZ2_JUGRE; transcription factor UNE12-like | ||||
STRING | Lus10002720 | 1e-127 | (Linum usitatissimum) | ||||
STRING | Lus10014726 | 1e-128 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10014726 |
Publications ? help Back to Top | |||
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