PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 24973.5 Da PI: 7.9047 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10014350 65 FSCNYCQRKFYSSQALGGHQNAH 87 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.57E-6 | 62 | 92 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDTKQYHDEE DSHDPPLNLI DSLDVGSSSS SSSSSDMITM MTAAASAHPN NPTPPAGDQE 60 PTRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTIAKRAGSG GAHHFMRASS SFHFSSSISS 120 LPLHGSPLGI QAHSLIHKPR RQQPNIISIA DHQRPAVGRL AAEYNFHLGS STTTSSGRFD 180 AGWRLSPAAD EIMMMHHGGG GGFWWSGGGS GGDGGGVRSK QDDLHKLDLS LKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014350 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812143.1 | 7e-48 | PREDICTED: zinc finger protein 1 | ||||
TrEMBL | A0A2I4DYC7 | 2e-46 | A0A2I4DYC7_JUGRE; zinc finger protein 1 | ||||
STRING | Lus10014350 | 1e-171 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-20 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10014350 |