PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014044
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 306aa    MW: 34953.1 Da    PI: 5.5487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16130219198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v+   +l lp  f+++h  +k ++ ++tl de+g+  e k+    ++++  l++GW++F+ +++L +gD +vF+l++ +ef  +v+++r
  Lus10014044 130 FVKPMLQSHVTGGFWLGLPCGFCKTHL-PK-NDEMMTLIDEDGEPSETKY--LAHKNG--LSGGWRGFAIDHELVDGDALVFQLISPTEF--KVHIIR 219
                  89*********************9994.32.4459***************..666655..9***********************987777..999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-20123220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-24124221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-26128219No hitNo description
PfamPF023621.1E-14130220IPR003340B3 DNA binding domain
SMARTSM010197.0E-22130221IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVESKKKLMS YEETRLQRLE ENRKRMEDLN LLKLARHLRP QHKSSPAKQA KPRAPKAVLG  60
PARRSSRIAD KPSVSYKEGM VEPLEGLRVG RSARYHRRSD RVYASRKARE NANERAEELE  120
SILEKEYPTF VKPMLQSHVT GGFWLGLPCG FCKTHLPKND EMMTLIDEDG EPSETKYLAH  180
KNGLSGGWRG FAIDHELVDG DALVFQLISP TEFKVHIIRV NDVEDGDDSE KETQAEEEED  240
DDSDKENQEG EEVDSEKENQ KEEQDDSDVD DVTRRRSKRL RAGNCFNKTV DILGSVALLW  300
LSKFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539590.11e-98PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M33e-81Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A1U8E8F32e-97A0A1U8E8F3_CAPAN; B3 domain-containing protein
TrEMBLA0A2G2Y0502e-97A0A2G2Y050_CAPAN; B3 domain-containing protein At3g19184-like
STRINGLus100140440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-69B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]