PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014043
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 401aa    MW: 44586.4 Da    PI: 4.9058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014043genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.7e-1623991397
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 + + ++ k+f+++h+  +  ++++ ledesg++W+ k+    ++++  l++GW++F + ++L egD+vvF+l+++ +f  +v +f
  Lus10014043 23 QIQKSMAKDFCDDHM--PMMDRMVELEDESGQVWSAKY--LAGKQG--LSGGWRRFSNHHKLAEGDVVVFELVKSIKF--KVCAF 99
                 5567899*******6..345679***************..777777..9**********************9885444..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.12511102IPR003340B3 DNA binding domain
SMARTSM010192.6E-915102IPR003340B3 DNA binding domain
PfamPF023626.7E-1323100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1727100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1627100IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-1630100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MQSSIWVPVL LSSTAMTIPQ AHQIQKSMAK DFCDDHMPMM DRMVELEDES GQVWSAKYLA  60
GKQGLSGGWR RFSNHHKLAE GDVVVFELVK SIKFKVCAFR YVHSGSKVRT TGSLCYLERK  120
IYWLMLCSTS YYGSQNFQVY IVRKNAFEKH DVELPNPDSD ALEPPIDTED ADKQCNHESE  180
GRDFELLQPL GAEVGKDGGN VESKSSEKET SADLKVPKPA PDFGQVKSYE DFNIVTSNGS  240
MINSELPNHV EFGYYALCSS QNSYLHQSIL KDVNSKLIAG MIVETVDIAN AMANSEVGTV  300
RGEDFATWGS KLDAFEKLGL EVGFLQVRLR ELVRIFDKAD KYKKLGAERG HVAEKVADLE  360
AQLGEARGEL EKLDSEIERL GFDGKGVELA FVELAAAPWS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100140430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-16B3 family protein