PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013874
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 326aa    MW: 35197.6 Da    PI: 6.7916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013874genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000161892271255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++++L++l+ +      +K + a++L +A+ YI+ Lq
  Lus10013874 189 RKEKLGERIATLQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 227
                  66788899********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.44E-5175231No hitNo description
SuperFamilySSF474597.46E-12175240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.735177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MADDDHHHRH HHHQTTAVTS SAVAFPHHQE QELHGEQEDD NGGEEDLLLT DGPNHHHPTT  60
FSQLLFSSHH QPHNASAATT SSFGLNDINS IYNLHNNNTS SSYPPQMLCF GSTDPQGVVC  120
VLPSPKINTT SSSNRKREGL TPEQSLNSVA VTSSNATDST DCGPPPPEAR QRASKRSRTD  180
KSTPSPRPRK EKLGERIATL QQLVSPFGKT DTASVLHEAM GYIRFLQDQI QVLCSPYLQS  240
PPPSTSAASP QEGNHGVLDN KNKKRELRSR GLCLVPVECT IHVANSNNGA DFWSPAAAAA  300
MGTNHNITST TTATSSCFLS LPTTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013874
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100138740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.19e-45bHLH family protein