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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10013767 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
GRAS |
| Protein Properties |
Length: 465aa MW: 52217.7 Da PI: 4.1843 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10013767 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 252.4 | 1.7e-77 | 84 | 460 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l+elL+++ + v+ ++ +a +lL++ ++ + ++++qRl++yf +AL r++++++++ +++ a+ + s + P++ +s++
Lus10013767 84 LIELLIAASHKVDVQEYDQAATLLQKCNTSSDGGDSSIQRLVSYFSQALLDRINSQSPGII------------MDDP--ATFMISSCLPTVLVSQFCG 167
5799************************99888889*******************777776............2222..223467899********** PP
GRAS 99 NqaIleavegeervHiiD.fdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
qaI+++v+g +rvH+iD f+i G+QW L+ aLa +++ l++T+vg + + +++++eetg++L++fAe+l+ pf+f+++++++l+dl+
Lus10013767 168 IQAIVDEVNGVKRVHVIDlFSIRSGAQWTILISALALSDRSIRVLKLTAVGLISDSdydrDQNTIEETGNKLESFAETLDFPFSFRAIMVSELNDLNQ 265
******************77******************************99777678899************************************* PP
GRAS 192 eeL............rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
++L + ++gEa++V l + +l +s s+e d+++++vk+++P+++vv+e ea+hns+ F+ rf+eal ++ a f+++ea + +
Lus10013767 266 DMLltlhddygddedDEEEGEAMVVYLEYVPRKLIMSSPSTEF--DKLMEVVKGINPRIMVVSEIEANHNSSAFAYRFMEALFFFGAYFECIEACMDN 361
***8777777665554555****************88888888..***************************************************** PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaW 373
+ +r+ vE+++ g++i+++va eg+er r+ l+ Wr+ +e++G+++++++++ +qak ++ +v +g +ve +++slv gWk+ pL svSaW
Lus10013767 362 GETKRAEVEAMWCGESIRSIVAFEGEERAVRNVPLRGWRMFFERFGMEEIEIGSNCLEQAKVVIDNVVgCEGlCTVEMDEKSLVVGWKGMPLHSVSAW 459
******************************************************************99889989************************ PP
GRAS 374 r 374
+
Lus10013767 460 K 460
8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MDNINNSSTH DQHQARSTVD PFICYFNYLS NQQQEVAFSK INPLHDHDHH QLSSEEIIRI 60
AGARFLNDDD DDSLSEEDTK KVDLIELLIA ASHKVDVQEY DQAATLLQKC NTSSDGGDSS 120
IQRLVSYFSQ ALLDRINSQS PGIIMDDPAT FMISSCLPTV LVSQFCGIQA IVDEVNGVKR 180
VHVIDLFSIR SGAQWTILIS ALALSDRSIR VLKLTAVGLI SDSDYDRDQN TIEETGNKLE 240
SFAETLDFPF SFRAIMVSEL NDLNQDMLLT LHDDYGDDED DEEEGEAMVV YLEYVPRKLI 300
MSSPSTEFDK LMEVVKGINP RIMVVSEIEA NHNSSAFAYR FMEALFFFGA YFECIEACMD 360
NGETKRAEVE AMWCGESIRS IVAFEGEERA VRNVPLRGWR MFFERFGMEE IEIGSNCLEQ 420
AKVVIDNVVG CEGLCTVEMD EKSLVVGWKG MPLHSVSAWK FIGT*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5hyz_A | 3e-24 | 84 | 460 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ888528 | 2e-63 | HQ888528.1 Linum usitatissimum clone GMU2AYZ01BBY2N microsatellite sequence. |
