PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013316
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 405aa    MW: 44969.1 Da    PI: 9.6136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013316genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61.1e-48251511128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  + pGfrF+P+d el+++yLkkk++g++  + evi++vdi+k+ePwdLp k+v ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v s ++
  Lus10013316  25 MFPGFRFSPSDVELISYYLKKKLDGEEKCV-EVIPHVDICKHEPWDLPaKSVVQSETEWFFFSSRGRKYPNGSQSKRATELGYWKATGKERSVRS-GS 120
                  579************************777.99***************667777899*************************************9.9* PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g+k+tLvf+ grapkge+t+W+mhe+ +
  Lus10013316 121 AVIGTKRTLVFHIGRAPKGERTEWIMHEFCM 151
                  *****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5319166IPR003441NAC domain
PROSITE profilePS5100551.51925167IPR003441NAC domain
PfamPF023653.2E-2327150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MATVATNSGG GVSRKTKKSI EASTMFPGFR FSPSDVELIS YYLKKKLDGE EKCVEVIPHV  60
DICKHEPWDL PAKSVVQSET EWFFFSSRGR KYPNGSQSKR ATELGYWKAT GKERSVRSGS  120
AVIGTKRTLV FHIGRAPKGE RTEWIMHEFC MHSGSNDSLV VCRLRRNVDF RGHHPTNDAS  180
EGNRVVEVNA AADSSKKTNS STSDSYSIEQ IDSASNDFEC YQQPNVVTPP VVAETSNHFQ  240
LLDGFTQPDE DFFADILNDD IIKLDETLLP TSLPQAAACA ADADRVQGLQ PSWMAAAPSN  300
RRVKLESRRR KKKIDQVAAP VEGKDEKAEK ERRSKSKKVP SCAVGLVMFV RKKRGNRVAL  360
LFVLVVLAVV GVLALVGSLY GEVRGTERLR RVLHLPDSWF RLAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-382716622167NAC domain-containing protein 19
3swm_B2e-382716622167NAC domain-containing protein 19
3swm_C2e-382716622167NAC domain-containing protein 19
3swm_D2e-382716622167NAC domain-containing protein 19
3swp_A2e-382716622167NAC domain-containing protein 19
3swp_B2e-382716622167NAC domain-containing protein 19
3swp_C2e-382716622167NAC domain-containing protein 19
3swp_D2e-382716622167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337RRSKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078968.11e-118NAC domain-containing protein 89
TrEMBLR4NEV61e-116R4NEV6_JATCU; NAC transcription factor 050
STRINGLus100133160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-90NTM1-like 8