PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10013205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 43853.2 Da PI: 6.5858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 24 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+++yL+ kv + ++ i+e+d++++ePwdLp ++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ Lus10013205 24 LPPGFRFHPTDEELITFYLASKVFHGSFCG-VQIAEIDLNRCEPWDLPDVARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSSsag 120 79*************************877.45***************8788899***************************************9888 PP NAM 96 ...............kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ l g+kktLvfykgrap+gekt+Wvmheyrl Lus10013205 121 ggggggggmtwnnshNKMLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 168 7777666665555444444***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-60 | 19 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.714 | 24 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-27 | 25 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEEMRQLCEA AAGEAVEDVN EHGLPPGFRF HPTDEELITF YLASKVFHGS FCGVQIAEID 60 LNRCEPWDLP DVARMGEKEW YFFSLRDRKY PTGLRTNRAT GAGYWKATGK DREVYSSSAG 120 GGGGGGGGMT WNNSHNKMLL GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG HFSYRSTSSN 180 HHSSSSSAKE EWVICRIFHK TVEKKNGGML FQLQGLQELA ALHDYPQNSP PPVGCLPPLL 240 EAAAACSSSP WELLCHHRPN NPPGFLTTTH PLLLTHNVNE DVTADQDDND LKTILSQAVN 300 VKNNNCHVMS TPTDVLKHCK KEDANIDQQV PGLGWQNYPN PLMPYINIDG QESGGFHMML 360 DHAPTSTTTS QSCFGLGGDT WSSLMGHAWP AHPLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 14 | 200 | 10 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10013205 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600114.1 | 1e-107 | NAC domain-containing protein 79-like isoform X2 | ||||
Swissprot | Q9S851 | 9e-87 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2N9EJM8 | 1e-105 | A0A2N9EJM8_FAGSY; Uncharacterized protein | ||||
STRING | Lus10013205 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 7e-84 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10013205 |
Publications ? help Back to Top | |||
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