PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012922
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 380aa    MW: 42242.2 Da    PI: 6.6861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012922genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06126146526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ f++ G Ck Gd C FaHg
  Lus10012922 126 ACPEFRK-GSCKKGDGCEFAHG 146
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.587122148IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4126146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4126148IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.038156180IPR000571Zinc finger, CCCH-type
SMARTSM003569.3156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MMLGEQHRLN HSVHVPPWED QTPDLFSPGN GGSTDYNPYY IQEALSALQR FLPSNDSDLD  60
QEFDIPGLDH DSPIDAYSCD HFRMYEFKVR RCARGRSHDW TECPYAHPGE KARRRDPRKF  120
HYSGTACPEF RKGSCKKGDG CEFAHGVFEC WLHPARYRTQ PCKDGTNCKR RVCFFAHTPE  180
QLRVLPQSPR SVNSADSYDG SPLRQAIEAS CVRNLPFLAS SHSPGSITPP EVDSPPMSPM  240
LSRSLGSNSV NEMVASLRNL QIGKMPSLPS SWNVQVGGGC SGGGSVYGSP RAGSILRPGF  300
CSVPTTPTRT PSGLRYHDFW DKVCEEEEPA MERVESGRDI RARMFERLSK ENNMLERVDP  360
GMGPASGGPD VDWVSDLVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076821.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-133C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A067KPP40.0A0A067KPP4_JATCU; Uncharacterized protein
STRINGLus100129220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-128C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]