PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10012557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28019.6 Da PI: 8.0117 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.6 | 3.1e-33 | 14 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgyWkatgkdke 91 lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+e+d+++++P +Lp + +a ++ yfF+k+d + g nr gyWk+tgk ++ Lus10012557 14 LPIGYRFRPTDEELIVHYLRRKVLGLPLPA-SVISELDVFHTHPCSLPGN-SACWEKRYFFCKKDGNVVAGA-GNRGggvsscgGGGGYWKHTGKARH 108 699***************************.99***************43.2345678*******9988654.33322334443459*********** PP NAM 92 vlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++s+ +++lvg+++ Lvf k+ + + ++t+W mhe+ l Lus10012557 109 IVSSsttNNQLVGMRTRLVFRKQnASDHHSNTKWAMHEFCL 149 **998888888**********7725556789********87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-40 | 8 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.095 | 14 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-21 | 15 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MDMEAKPNMV VKELPIGYRF RPTDEELIVH YLRRKVLGLP LPASVISELD VFHTHPCSLP 60 GNSACWEKRY FFCKKDGNVV AGAGNRGGGV SSCGGGGGYW KHTGKARHIV SSSTTNNQLV 120 GMRTRLVFRK QNASDHHSNT KWAMHEFCLV GLATIPFTNQ VVKVQLGDWV VCSVFQKKKR 180 PSYNNRKKPP NPIEFRMEEL SDRGPEEEEE EEPCSSPCSS GVTELSNSTS YLSNGLDGEG 240 DINSFNVSFS SSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-22 | 2 | 178 | 8 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10012557 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | B9RH27 | 5e-57 | B9RH27_RICCO; Transcription factor, putative | ||||
STRING | Lus10012557 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14000.1 | 3e-33 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10012557 |