 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lus10012421 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
| Family | ARF | ||||||||
| Protein Properties | Length: 939aa MW: 102827 Da PI: 5.7855 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 75.7 | 5.4e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F ++++ +l
Lus10012421 156 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldyTMQPPS-QELIVRDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI--RDEKSQL 250
99*********************999****99555544.59************************************************..4577778 PP
EEEEE-S CS
B3 93 vvkvfrk 99
+v+++r+
Lus10012421 251 LVGIRRA 257
*****97 PP
| |||||||
| 2 | Auxin_resp | 114.4 | 1e-37 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s F+++YnPra++seFv++++k++ka+ ++v+vGmRf m+fete+s++rr++Gt+vgvsdldp+rWp+SkWr+L+
Lus10012421 282 AAHAAASRSSFTIFYNPRACPSEFVIPLAKYRKAVCgTQVAVGMRFGMMFETEESAKRRYMGTIVGVSDLDPLRWPGSKWRNLQ 365
79********************************998*********************************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 5.23E-46 | 143 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 152 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.63E-22 | 155 | 256 | No hit | No description |
| Pfam | PF02362 | 8.2E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.197 | 156 | 258 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.5E-23 | 156 | 258 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 7.0E-33 | 282 | 365 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 2.2E-8 | 824 | 909 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 26.02 | 824 | 908 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 4.66E-8 | 837 | 903 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 939 aa Download sequence Send to blast |
MASVEEKGKA GVGLVGAGAQ IPATSTLLDE MKLLKEIQDH SAAAGSRKAI NSELWYACAG 60 PLASLPQVGS LVYYFPQGHS EQVAVSTKRN ATSQIPNYPN LPSQLLCQVH NVTLHADRDT 120 DEIYAQMSLQ PVNSDKDIFP VPDFGLKLSR HPAEFFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPQLDYTMQ PPSQELIVRD LHDNAWTFRH IYRGQPKRHL LTTGWSLFVG SKRLKAGDSV 240 LFIRDEKSQL LVGIRRANRQ QSTLPSSVLS ADSMHIGVLA AAAHAAASRS SFTIFYNPRA 300 CPSEFVIPLA KYRKAVCGTQ VAVGMRFGMM FETEESAKRR YMGTIVGVSD LDPLRWPGSK 360 WRNLQVEWDE PGCSDKPNRV SSWDVETPES LFIFPSLTSG LKRPMHSGYL GGETEWGNLI 420 KRPLVWLPDG GNTSLAYPPF SDSGSDRLLN MLMKPPAFNY PGLSSPSFQD ISAAKGPSVE 480 DATKIMQGTM NQQSVGMSVG NHKNYQQKVC EIGKSSSSKI NEVPGKSHLP TKADSRVQTQ 540 PDKIKSEPAH LTDQLSHVTS VGERTDQHKS GDLQNQLPTD HWSMQAQQPL EQPHFPQVDQ 600 NPLNSPLPFL DTVEEWTSQP PVMSASSIQR QSAPLSMFGL QEPSAVFPEI MNNTTTAFPL 660 VNQDAWDDDH QLNNLRYLTQ SSQFGGMNQQ QGHCIFNVSA GLKNLPDESN GQNQSGMYGS 720 LSVDVSNGGV IDPSISSAIL DDFCTLKDTD FHNLSSDCLL GNFSSSQDVQ SQITSVSLAD 780 SQAFSQQEFP DSSGGTSSSN VEFDKGGNLL PTNSWQPVAP PRVRTYTKVQ KAGSVGRSID 840 VSSFKNYEEL CSAIECMFGL GGLLNNPRES GWKLVYVDYE NDVLLIGDDP WEEFVGCVRC 900 IRILSPQEVQ QISEEGMKLL NNANIQQGTT SSLAGQGY* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 390 | 5 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
| |||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lus10012421 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002510508.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | B9R865 | 0.0 | B9R865_RICCO; Auxin response factor | ||||
| STRING | Lus10012421 | 0.0 | (Linum usitatissimum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Lus10012421 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|