PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012236
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 523aa    MW: 59306.8 Da    PI: 4.4045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012236genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.17.4e-421525214374
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lL +  ea++ ++ +la+ ++a +se +sp+gd+++Rla+ + + L++ +             ++++    ++  aa+++f++++P+ +f+h++aN+a
  Lus10012236 152 LLKAYGEAMEGDHIQLAEVIMASVSEKVSPAGDSLERLAFNLSQDLRKEVDY----------IKQEA---LKNYEAAFRAFYQIFPYGRFAHFAANSA 236
                  6677789999*************************************99998..........34444...667778999******************* PP

         GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvakrled 188
                  ++e++  + e +Hi+Dfdi++G+QWp+ +++L+ R +g  s+ + +v++  +              + ee+++rL++  +++g+++e++ +  ++l +
  Lus10012236 237 MVESIPIAtESIHIVDFDIGEGVQWPPVIDTLS-RMRGVKSVNLMAVNDWGEMefseaelgcpAMWNFEEVKRRLRDHSNRVGLKMEIRGIRIEDLRE 333
                  *****98889**********************7.67899999999*9996666777888888888899**********************95555555 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklprese 280
                     ++ ++k+ E  + n+++ l ++   +v +++  de+L+l ++l   s  +v+  e ea    n+ + F   f + +eyy +l++s+e ++p+ +e
  Lus10012236 334 EMERRKKMKKLEWCVFNCMVGLPHMR--RVRSRKLVDEFLELGNELvneSGGIVTRGEGEAWEslNDcSGFGSFFERNMEYYRSLLESIELNFPELAE 429
                  5555557788***************7..78888889****998888444678*******9533246525788888999******************** PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvS.aWr 374
                  +r+ +E  ++++ i+ v   +  +   ++   e  +++ ++   ++ ++s++  ++ak ++++   s g r+  +e +++vl Wk+ pLv vS  Wr
  Lus10012236 430 ARMALECLFVAPFISAVGWFRRWS---EM--SEIQNKKEGAPTVRKWRVSKESLEEAKEMMNERMtSYGVRIGgDEGDEMVLEWKGSPLVKVSsTWR 521
                  ********9999998776665555...33..3333455566778999***********99999887999999856678899*********9862576 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.77123510IPR005202Transcription factor GRAS
PfamPF035142.6E-39152521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTNLQEELLN NQSSWPFYNM INSHFDHDQS YGHDHSPTDF PLPPTSDDMD DIMADSSFHQ  60
FSSMLTDDVS QHSDDGLGMM NMMVTLSTDE LLMGLDQFDP NFTDSEAYSS AIPSPSLSPS  120
TSILSNSAIE VASLNIPGEG SELGNEISVF NLLKAYGEAM EGDHIQLAEV IMASVSEKVS  180
PAGDSLERLA FNLSQDLRKE VDYIKQEALK NYEAAFRAFY QIFPYGRFAH FAANSAMVES  240
IPIATESIHI VDFDIGEGVQ WPPVIDTLSR MRGVKSVNLM AVNDWGEMEF SEAELGCPAM  300
WNFEEVKRRL RDHSNRVGLK MEIRGIRIED LREEMERRKK MKKLEWCVFN CMVGLPHMRR  360
VRSRKLVDEF LELGNELVNE SGGIVTRGEG EAWESLNDCS GFGSFFERNM EYYRSLLESI  420
ELNFPELAEA RMALECLFVA PFISAVGWFR RWSEMSEIQN KKEGAPTVRK WRVSKESLEE  480
AKEMMNERMT SYGVRIGGDE GDEMVLEWKG SPLVKVSSTW RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1616742221271GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335343ERRKKMKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012236
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526659.21e-155nodulation-signaling pathway 2 protein
TrEMBLA0A2K1XEP91e-148A0A2K1XEP9_POPTR; Uncharacterized protein
STRINGLus100122360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-15RGA-like 2