PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012202
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 269aa    MW: 30368.5 Da    PI: 8.7558
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012202genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.5e-33165221158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k rkpylheSRh hA+rR+Rg+gGrF
  Lus10012202 165 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKPYLHESRHLHAMRRERGCGGRF 221
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.559164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-28166221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-24167189IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860169189IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.6E-24198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMYRKLDHEA ANQKQQHQYN QHYESSNPQP IWYSNTNGDN GGSGTIDFSQ LGCSSSSSRY  60
DVGSDSKFTD SKPQFWLSDG IDNTARIMQQ TLDPASDLSN SRQGCQEQHH HHSQAVIPAA  120
INEFIGLQPQ LDSSVGPSFA EPQYLGVDVH PNEMAVPVPL ELPEEEPVYV NAKQYHGILR  180
RRQSRAKAEL EKKVVKVRKP YLHESRHLHA MRRERGCGGR FLSTKKNHHY HQQQQIGEGS  240
SADNKNSKSS HVNPTGNVWM DGKRRTRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21165233270NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623103.14e-42nuclear transcription factor Y subunit A-9-like isoform X1
TrEMBLA0A2C9V8Z09e-41A0A2C9V8Z0_MANES; Uncharacterized protein
STRINGLus100122020.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.15e-21nuclear factor Y, subunit A4