PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012029
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 462aa    MW: 50761.4 Da    PI: 6.8251
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-2763119258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDg++W+KYGqK+ kg+++prsYYrC + gC+v+k+ver++ +p +v +tY+g Hnh
  Lus10012029  63 DDGFRWKKYGQKNLKGTPYPRSYYRCPYVGCTVRKHVERDSLNPIFVLTTYNGVHNH 119
                  8******************************************************** PP
2WRKY42.21.6e-131732151759
                  T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +s+++r+YYrCt++gCp++k ++r+ +dp+++++  ++ H h 
  Lus10012029 173 QSDYTRAYYRCTHPGCPARKTLQRDLDDPEFLITEVQNAHSHA 215
                  6899*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2848120IPR003657WRKY domain
SuperFamilySSF1182903.92E-2554120IPR003657WRKY domain
PROSITE profilePS5081129.63157122IPR003657WRKY domain
SMARTSM007741.7E-3162121IPR003657WRKY domain
PfamPF031064.0E-2263119IPR003657WRKY domain
SMARTSM007749.3E-7172216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-11173216IPR003657WRKY domain
SuperFamilySSF1182909.81E-11173215IPR003657WRKY domain
PfamPF031061.0E-9173214IPR003657WRKY domain
PROSITE profilePS5081113.173174217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSKPADCPEQ PSLPWDLVDE DFVPQDDDAL AESLGILRDF DNTAAGKSKH VFFRTKSEVD  60
LIDDGFRWKK YGQKNLKGTP YPRSYYRCPY VGCTVRKHVE RDSLNPIFVL TTYNGVHNHG  120
TATPGEKAIS HGTTKPRSIH DSSIESDNCH ATNLDCESDS NLMIRQLKIG SSQSDYTRAY  180
YRCTHPGCPA RKTLQRDLDD PEFLITEVQN AHSHAAVAPT KGKSNSLDTA RRSRFSPVSE  240
YHASRLINLD PISKSSAAGT RRKGNVCSMY TSDPLRFGSD KGRLIKTASP DDAGLGLSAN  300
NGYSSFSNPS FVSGYGNNNE TLPMLRSKTG FYYSGTASII DFGVETSFTE KALPPPATYS  360
LISGSEESYA INLDLGAGLS SSAENTCYGK QDAEKVGGRT LALAESNRLQ FQSSIYMEEV  420
YLSRSASPYL CAHNLISIFL PRCEVEHLWN GGEQETRKIP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2546119174Probable WRKY transcription factor 4
2lex_A2e-2546119174Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012029
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120290.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-26WRKY DNA-binding protein 50