PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011888
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 710aa    MW: 76942 Da    PI: 6.1753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011888genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.6e-20557655295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W+++++     ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++++
  Lus10011888 557 QKVLKQSDVGSLGRIVLPKKEAETHlpELDARDGISIAMEDiGTSRVWNMRYSLrfwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCGK 651
                  79*************************99999*********7778*******7778888888888887.********************..5559998 PP

                  .EEE CS
           B3  92 lvvk 95 
                  ++++
  Lus10011888 652 YLIR 655
                  8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-26550662IPR015300DNA-binding pseudobarrel domain
CDDcd100151.62E-34554657No hitNo description
SuperFamilySSF1019364.45E-21555651IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306556660IPR003340B3 DNA binding domain
SMARTSM010191.3E-16556660IPR003340B3 DNA binding domain
PfamPF023627.1E-16557654IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MHEEEDLYAA DQIWAPEQDP GNNLLDGSIF YKGADGGSGG GDFPPLPDFP TMSSSSSSTS  60
SMPPATTVKP PPTPSAAAAM STSSSASSES SHTNHNNNNS SYCYYEDNSN VYNTDQMVDT  120
PCAGALSSTA SMEISEQLPP VGLESIDCCM DGMDDFGCMD LLMDPIFGGG DHLDGFQQQY  180
ESQDGVVPVQ QQAKDAAAVG EEDLGEVFLE WLKNNKESVS ADDLRRIKIK KSTIDSAAKR  240
LGGGKEAMKQ LLKLILEWVQ MNHLHRRRSN KYDNTEADVA VENSDPAPPP LPTSYDNYHQ  300
STTQDNTGYL DPVNPWATAS DPVVGYPYGM GSDPFGNNGG GVVGPNFNAN YGVHQHQSTD  360
YNFTSQVNES AQSWPSSRFP TPAPSPPVHY GGGRFDGFTQ PGGFSGYLNQ NQYPYPYLSA  420
ATAEQSGGGG QCRGGDTNGL VRMGSSATKE ARKKRMARQR RFIPHHHRNH HTTGAGLAEN  480
QVGAGLVQQQ QQGNLVYWPM PPQTGINGPG LVPMDGSAVV QTVDRPAVQN QNHQKQGGAS  540
DKRKGWKAEK NLRFLLQKVL KQSDVGSLGR IVLPKKEAET HLPELDARDG ISIAMEDIGT  600
SRVWNMRYSL RFWPNNKSRM YLLENTGDFV RANGLQEGDF IVIYSDVKCG KYLIRGVKVR  660
QPAGLTKPEN KKAATAANGS KSQRKPPANS SSAANNKTTT PVQQLDTYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-365526611108B3 domain-containing transcription factor FUS3
6j9b_D1e-365526611108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451019.11e-168B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLA0A3B1EH380.0A0A3B1EH38_LINUS; ABA INSENSITIVE 3-2 (Fragment)
STRINGLus100118880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-94B3 family protein