PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011430
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 308aa    MW: 33593 Da    PI: 7.5208
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011430genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17204238135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10011430 204 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 238
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.8E-795289IPR016679Transcription factor, GATA, plant
SMARTSM004012.4E-17198248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14202236IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.51E-15202261No hitNo description
PROSITE profilePS5011411.319202234IPR000679Zinc finger, GATA-type
CDDcd002023.13E-14203254No hitNo description
PfamPF003202.6E-15204238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQAPEFFTTA SYYGGDQSHF AVDDLLNFPN EGDAIMSDGF FDSIAKTRAG DSPAFTPNHS  60
SNSSSSTSAA AASYRNAADS HFSTELCVPY DDMAELEWLS NFVDESYSMD PTLETNLHML  120
QIGSKPTATE STDSEPSVRN ANNAMFHNEN PLPGKARSKR SRAAPGNWTA RLLHLTPSTK  180
GSDSNPNPAS HPSRKGAGSG VRRCLHCATE KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  240
EYRPAASPTF VPAKHSNSHR KVVELRRQRE AAAHQEQLIS QSSIFGASNG GDEFLVHHHH  300
HHFRHMI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021635203.11e-119GATA transcription factor 9-like
TrEMBLA0A2C9W2821e-117A0A2C9W282_MANES; GATA transcription factor
STRINGLus100114300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-71GATA transcription factor 9