PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10011114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 165aa MW: 18951.6 Da PI: 6.5356 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.4e-13 | 54 | 155 | 2 | 94 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.se 89 +k+lt sdv+ s +rl+l k++a++ ++ +++ +t++d +g+++ ++l+ + + y+lt+GW+ F+++++L Dfv + +r ++ Lus10011114 54 EKQLTESDVNPSqARLSLRKDYARDSilpllnsTEDVVRGIRVTVNDADGKEFPMQLKLWAEK-VYMLTSGWRPFAEDHRLVsYEDFVAVWVFRRlDT 150 79*******98879*********999***998844446999****************999986.8****************94566664443345555 PP E..EE CS B3 90 felvv 94 ++l+v Lus10011114 151 GSLCV 155 55555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-15 | 53 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-13 | 53 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.04E-13 | 53 | 157 | No hit | No description |
SMART | SM01019 | 0.0026 | 53 | 157 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.151 | 54 | 161 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-10 | 54 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MYSDTERQNT LPIPPDEKTP KLTREQHWRP PRIRPPAIPG LPEFLVGDCT EPYEKQLTES 60 DVNPSQARLS LRKDYARDSI LPLLNSTEDV VRGIRVTVND ADGKEFPMQL KLWAEKVYML 120 TSGWRPFAED HRLVSYEDFV AVWVFRRLDT GSLCVAVTTR RLPV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10011114 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448606.1 | 1e-43 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A0D2U806 | 2e-42 | A0A0D2U806_GOSRA; Uncharacterized protein | ||||
STRING | Lus10011114 | 1e-118 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-25 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10011114 |