PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010687
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 612aa    MW: 70925.5 Da    PI: 6.9969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010687genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-06252271625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  Lus10010687 252 CPFHLKTGSCRFGQRCSRVH 271
                  ******************99 PP
2zf-CCCH27.74.7e-09311338126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  ++++    C++G+ C+F+H+
  Lus10010687 311 WKVAICGEYMKSRlqNCSRGSACNFIHC 338
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436246274IPR000571Zinc finger, CCCH-type
SMARTSM003564247273IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4251271IPR000571Zinc finger, CCCH-type
PRINTSPR018481.7E-11252271IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.7E-11271291IPR009145U2 auxiliary factor small subunit
SMARTSM003560.01310339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.037310340IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7311338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MITRDCHTSP ELDLPTGNKH LILTGKTQSE EVVTSSKDLR REEEDEVMSY IPVDRKRRRQ  60
GNELEDDEAI EEGSRQPSKS PRRGWIRISD GSAYGSLSSR VIAGVADGAP SYPLMSCFIV  120
IELNESDREM VVRRLRMRSI IYFSLAACRW VATLKCQGAS KDDGVEEDSN WEYVEEGPPE  180
IIWQGNEIIV RKKRVRVPKK HVDVQTKEDA NRPTSNPLPP EPEASSLSAQ EMLKNVAQEV  240
LNFGTEQDKA HCPFHLKTGS CRFGQRCSRV HFYPDKACTL LIKNMYNGPG LAWEQDEGLE  300
VTCEFVNITR WKVAICGEYM KSRLQNCSRG SACNFIHCFR NPGGDYQWAD WDKPPPRFWM  360
EKMTVLFGCS EATDRYVDNE EKTGRTPSSA NKERARYSRR SMSRDFEHQN DRYGRKRDGE  420
DYREEGQGRN VDNGKRRSKN IEEEDDRRLD YKCEGGWSDR DVDSNTKREY RGSSRRARSS  480
GRQRSDVDGH GNGNGGGRDR ERESRHSKSK IDVYSRRMPL GEEELEDDGR HYERGDMDSL  540
LEKETRERRR WNDDHESADD EATKMLMLKK TKKLERESRS NRKHWSTKRT QQDSSMHDYE  600
EDRWEGNVFK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100106870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.19e-72C3H family protein