PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 256aa MW: 28225.2 Da PI: 8.8492 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.5 | 4.2e-08 | 22 | 52 | 6 | 35 |
YABBY 6 sseqvCyvqCnfCntilav.svPstslfkvv 35 s+q+Cyv+C++C+t+lav ++P+ l+ ++ Lus10010361 22 LSDQLCYVHCKYCDTVLAVlTLPFPLLIIII 52 69***************99456766655554 PP | |||||||
2 | YABBY | 136.1 | 4.2e-42 | 127 | 190 | 107 | 170 |
YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +p++ pv+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Lus10010361 127 DTTPKPAPVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 190 5679999*******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-5 | 22 | 51 | IPR006780 | YABBY protein |
Pfam | PF04690 | 1.9E-38 | 131 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.85E-8 | 134 | 184 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-4 | 139 | 182 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSSSSASAAS LSPDHHHLSG ALSDQLCYVH CKYCDTVLAV LTLPFPLLII IIIISSRGHE 60 EHFSTAADDD QQRRRKQKPP ATPRLENPPP LRHQQLGLND VVSSPFMPIR GGGSGGGGGT 120 MGLGFEDTTP KPAPVNRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDISHR EAFSAAAKNW 180 AHFPHIHFGL MPDHQPVKKP NLLQQWAHFP HIHFGLMPDH QPVKKPNLLQ QEAEDQMALI 240 KDGFFPPANL GVTPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | QRRRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010361 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027335074.1 | 2e-61 | axial regulator YABBY 1 isoform X1 | ||||
TrEMBL | A0A1Q3BV98 | 3e-59 | A0A1Q3BV98_CEPFO; YABBY domain-containing protein | ||||
TrEMBL | U5FUY2 | 2e-59 | U5FUY2_POPTR; Uncharacterized protein | ||||
STRING | Lus10010361 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 5e-52 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10010361 |