PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009930

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 216aa MW: 23106.3 Da PI: 8.7224

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009930	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133	1.2e-41	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lqq++++l++el++++ Lus10009930 23 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQQEIQSLQTELNAVR 120 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Lus10009930 121 SE 122 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.907	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-41	23	120	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGRRSVVMMN MISPPGVLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG 60 ASNVSKMLLE VPESQRADAA NSLVYEANLR LRDPVYGCMG AISALQQEIQ SLQTELNAVR 120 SEILKYKYRE ATTSLLSSAA HASLISSGVV SVIAPTTPVP PPRTPTLAPP PPPPPQPSIV 180 ISSSSSSTNA SNNNNNNLYS SITASDRHSG VPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	23	130	11	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	23	130	11	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009930

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091188.1	8e-85	LOB domain-containing protein 15
Swissprot	Q9AT61	6e-75	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A067JNV9	2e-83	A0A067JNV9_JATCU; Uncharacterized protein
STRING	Lus10009930	1e-155	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-75	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Lus10009930

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]