PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009858
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 394aa    MW: 44569.1 Da    PI: 4.9594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009858genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.11.4e-13141511128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  lp G +F Pt  elv +yL +     + +    ++e d+y   ePw++ k    + ++e+++ y F+k +k++++  r+    + g  +   k+k+ +
  Lus10009858  14 LPSGAKFLPTATELVGHYLYNIHGIFTPNQCYPVQESDLYAEkEPWEIWKdhqiRSHSETNDFYLFTKLKKAATNFVRTIGN-AGGNGHGEVKEKTCT 110
                  699*****************9988888666577*****996549****6434333334555779999999998887777764.457777777777777 PP

          NAM  94 sk.kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +g++     vg ++ +++ ++r+ ++e+ +W++ eyr+
  Lus10009858 111 TEfRGRVdglmwVGKRRKFTYKNNRNLESENRKWILYEYRI 151
                  776333356667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-1411161IPR003441NAC domain
PROSITE profilePS5100517.99414180IPR003441NAC domain
PfamPF023651.0E-815151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MENGGDLSDV LSFLPSGAKF LPTATELVGH YLYNIHGIFT PNQCYPVQES DLYAEKEPWE  60
IWKDHQIRSH SETNDFYLFT KLKKAATNFV RTIGNAGGNG HGEVKEKTCT TEFRGRVDGL  120
MWVGKRRKFT YKNNRNLESE NRKWILYEYR IGNFDTVVCT LRNNGSPAEE KRSVNRMRRR  180
KFEEILGCIV HDRRTELIPG PALKKLQCHR KQSNSADVLP TTPILVEDET ASFDDATVPV  240
ENETSAFEGA GDTVLVPLNS PTRNNPVQSG VEKVKIFGGI SEPETKVCDE DEEAPNSYSF  300
TTYCGIGVIL DDVLATEAPH DHQDTIRTGK DGVIPRDDVE LLQFGDFKEA ARENMLLLQP  360
WCTPPLLLED NRYYTLINSL WDWNDCLPLP ISM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100098580.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-09NAC-domain protein 101