PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009775
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 523aa    MW: 58636.4 Da    PI: 6.1815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009775genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001795114221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C++Cgk F ++ ++  H +
  Lus10009775  95 VCENCGKEFMSWKSFFDHEN 114
                  6*****************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.68E-51537No hitNo description
PfamPF139126.3E-41537IPR007087Zinc finger, C2H2
SMARTSM003552.91537IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-589113No hitNo description
SMARTSM0035511094114IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-10239264IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-8239262No hitNo description
PROSITE profilePS5015710.076240267IPR007087Zinc finger, C2H2
SMARTSM003550.13240262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-8329356No hitNo description
PfamPF139122.8E-13333357IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369334356IPR007087Zinc finger, C2H2
SMARTSM003550.44334356IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MALIVDQQLK GELKHFCKIC KKGFGCGRAL GGHMRAHGIG DDIPNDMEEE EEEEEEEEED  60
EDEEDDNNYN NSMGPANKRM YALRTNPNRQ KSTRVCENCG KEFMSWKSFF DHENGKCSSI  120
DHYEAEKEEY ETPVRDGAAG NNWSKRKRSY RAIIIDNHNN YDCPSSEEED LANCLMMLSN  180
ASIDNPAIVE PEESSASASK DDEVYHRMNY HTVPPMSYRP GMIDKAKGIV VTTAGTKGVF  240
ECKACKKVFN SHQALGGHRA SHKKVKGCFA ARLDNHQNDD NLVEDDIITT QQQQRQRLEE  300
QYDNVKTTSS SSFPLDNNNI VSTYSSSKRK SKVHECSICH RVFSSGQALG GHKRCHWITS  360
NSSSPTTISV DHATTLAARF HQFQYHLLQI QHRPKFTTTT TNNNNNNNNN TKTEYGAVDL  420
TLDLNINPAS NTGVVSHPSP TSFDCLQSRI CKENNRDSNH HDEGNRMNNL NKDDRNGKVL  480
EAEDDEADSK AKLAKLSDLK DIKANGKSSP WLQVGIGSTT NT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511650.11e-166zinc finger protein ZAT1
TrEMBLB9RD611e-164B9RD61_RICCO; Uncharacterized protein
STRINGLus100097750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-28C2H2-like zinc finger protein