PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009770
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 594aa    MW: 64982.4 Da    PI: 6.8441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009770genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22117217299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   kvlt sd+++ g +++p+ +a+++         ++ +  tl++ d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+v+F+  ++ ++e+
  Lus10009770 117 AKVLTASDANNGGGFSVPRFCADSIfpplnydADPPVQ--TLSVSDVHGIKWNFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVLFM--KNFRGEM 210
                  699*******************999*****96444444..9************************************************..6688999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++v+r+
  Lus10009770 211 FIGVRRA 217
                  9**9986 PP
2Auxin_resp76.85.6e-26266349283
   Auxin_resp   2 ahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   ++a+++ +FevvY+Pr+ s s+Fvv+++ ve+al++ +s G+R+kma+e+ed s+ ++ +Gtv++ +      W++S+Wr+L+
  Lus10009770 266 TERAAQGLPFEVVYYPRSwSFSDFVVNADVVEAALSMFWSSGTRVKMAVESEDLSRATWfQGTVASATVPGCGPWQGSPWRMLQ 349
                  578999***********7477************************************************999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-30109236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-32115223IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-16116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182116218IPR003340B3 DNA binding domain
PfamPF023622.4E-20117217IPR003340B3 DNA binding domain
CDDcd100172.74E-18118216No hitNo description
PfamPF065075.0E-23266349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MVDRRIWQSC AGSSVRIPTL NSRVYYFPQG HFEQSSSSTL PLLSSLVLSR PMILCRLSSI  60
QFLADPVTDE VYVKLFLLPL DPSSLNAAAL PLLEPSPTAA SSSSAAAAND DGIMAYAKVL  120
TASDANNGGG FSVPRFCADS IFPPLNYDAD PPVQTLSVSD VHGIKWNFRH IYRGTPRRHL  180
LTTGWSKFVN SKKLIAGDSV LFMKNFRGEM FIGVRRAARS NNAANFARWR DHFGTGGDGK  240
VKLKEDGCSR TSARGMLSPE TVAEVTERAA QGLPFEVVYY PRSWSFSDFV VNADVVEAAL  300
SMFWSSGTRV KMAVESEDLS RATWFQGTVA SATVPGCGPW QGSPWRMLQI KWDEPEVLQS  360
AQRISPWRVE FVSTNSSLGT GIPPAKKLRY PDKSEFLIDG ERDLRFPLSG LGNSTMAQMN  420
QPLLSYNNFP AGMQGARHYS FPPFELSNSV SDNGLQIGAD TCVTNIMVPK MSSVSTELNI  480
GSSKSENLSP DSQSSVQSFS TELVGNQGCT SRNWGTSSFQ LFGKMIHMNQ AVERGCDVVS  540
CLEDENAKKC KDNQGVNQLL DLSLTSSYTE LLNKIDVQCQ RSAGLEAYEQ SIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-68437621359Auxin response factor 1
4ldw_A1e-68437621359Auxin response factor 1
4ldw_B1e-68437621359Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078139.10.0auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGLus100097700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-157auxin response factor 17