PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 26465.5 Da PI: 6.776 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.5 | 1.6e-36 | 11 | 88 | 1 | 78 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +CaaCk+lrrkC+++C++apyfp +qp+kfa vhk+FGasnv kllk+l+ +reda++sl+yeAe r+rdPvyG+v+ Lus10009336 11 PCAACKFLRRKCTQECIFAPYFPPDQPQKFASVHKVFGASNVAKLLKELSAVQREDAVNSLAYEAEERLRDPVYGCVA 88 7***************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.951 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-36 | 11 | 88 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MMSSSLSSNS PCAACKFLRR KCTQECIFAP YFPPDQPQKF ASVHKVFGAS NVAKLLKELS 60 AVQREDAVNS LAYEAEERLR DPVYGCVASN VAKLLKELSA VQREDAVNSL ALHHDLELAR 120 RELANYIGAP TPHQQQYQNY PSYPNHNQQE VRFNGGGLGG NYEITRNYIN YEQIQSGNNA 180 EAAQVFFQTR QQEGENGHFD YNRKMLRRRT AAAGDQEEDR EVEVDRGLLM RPTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-41 | 4 | 131 | 4 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-41 | 4 | 131 | 4 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009336 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039214.1 | 3e-54 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_011039215.1 | 3e-54 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_011039216.1 | 3e-54 | PREDICTED: LOB domain-containing protein 36 isoform X2 | ||||
Swissprot | Q9FKZ3 | 8e-51 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2K1ZNX8 | 9e-53 | A0A2K1ZNX8_POPTR; Uncharacterized protein | ||||
STRING | Lus10009336 | 1e-175 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-51 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10009336 |
Publications ? help Back to Top | |||
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