PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24992.9 Da PI: 7.5728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.1e-38 | 18 | 117 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+C+++pyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lq+q+ +l+ael ++ Lus10009298 18 PCGACKFLRRKCVKGCIFSPYFDSEQgTAHFAAVHKVFGASNASKLLMRIPPHHRLDAVVTLCYEALARVRDPVYGCVAHIFTLQHQVVNLQAELGYI 115 7***********************9989******************************************************************9988 PP DUF260 98 ke 99 ++ Lus10009298 116 QA 117 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.895 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSNSGGERGG GGGGAAPPCG ACKFLRRKCV KGCIFSPYFD SEQGTAHFAA VHKVFGASNA 60 SKLLMRIPPH HRLDAVVTLC YEALARVRDP VYGCVAHIFT LQHQVVNLQA ELGYIQARLA 120 NLHGTSVFGQ LTTSHQPQPP QQPHHQTTSH SLVPATTEAA GTLGCINDNY YNNYKNAVQY 180 ADNNQYNNWS EISSSSSNNM YDEEEMEEMA REFVARYLPG VRFPKPSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232675.1 | 2e-79 | PREDICTED: LOB domain-containing protein 19 | ||||
Refseq | XP_011090856.2 | 4e-79 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 6e-61 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A1R3I7V5 | 2e-75 | A0A1R3I7V5_COCAP; Uncharacterized protein | ||||
STRING | Lus10009298 | 1e-172 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-57 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Lus10009298 |