PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009227
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 389aa    MW: 42111.1 Da    PI: 5.1557
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009227genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18289322134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +tkTp+WR gp g+ktLCnaCG+++++ +
  Lus10009227 289 CMHCEVTKTPQWRAGPMGPKTLCNACGVRFKSGR 322
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-694361IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.596283319IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-16283333IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14287320IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-14287346No hitNo description
CDDcd002021.20E-14288335No hitNo description
PfamPF003204.0E-16289322IPR000679Zinc finger, GATA-type
PROSITE patternPS003440289314IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVGQTTSSSS LNFMEELDFF DQMDDLIDFP SDDIDAILSC PSGDAVKPNF FSAADNKTED  60
DGTGSFLPPS IWAAHPGSDP GFPNHSASDL SAELSVPYED IVQLEWLSTF VEDSFSGGSL  120
TMNKNECSSF LDKDLSSSSS HGQHFRTSSP VSVLESSSSC SGDQKGAVVI DVGAGKCGRA  180
RSKRPRPATF TPRPPMQHLI SPTSSITETI TPHGVCLAPK AHSDSENYAE SRLLIKIPTH  240
LLSEHKAEPK KKKKKVKVTA PTPPAPALEE ESNNSEEQQQ QQQQAVRKCM HCEVTKTPQW  300
RAGPMGPKTL CNACGVRFKS GRLFPEYRPA ASPTFVPTLH SNSHKKVVEM RTKVVGDEMF  360
GGIDDGSLIP ESPELLIPGD NLALEEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316371.31e-126GATA transcription factor 8
RefseqXP_011041012.11e-126PREDICTED: GATA transcription factor 8-like
RefseqXP_011041013.11e-126PREDICTED: GATA transcription factor 8-like
TrEMBLA0A2I4KL321e-125A0A2I4KL32_POPTR; GATA transcription factor
TrEMBLA0A2K1YYK81e-124A0A2K1YYK8_POPTR; Uncharacterized protein
STRINGLus100092270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-42GATA family protein