PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008795
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32166.4 Da    PI: 4.4625
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008795genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-2071124356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t+eq++ Le+ Fe ++++  e+++eLAkklgL+ rqV vWFqNrRa+ k
  Lus10008795  71 KKRRLTAEQVNLLEKSFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCK 124
                  56789***********************************************99 PP
2HD-ZIP_I/II126.89.3e-4170161192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl++eqv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR ktkqlE+dy+ Lk++yd+l+++ ++  ke+++L+ e+ 
  Lus10008795  70 EKKRRLTAEQVNLLEKSFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCKTKQLERDYDLLKASYDSLRSNYDSAVKENDRLKYEVV 161
                  69***********************************************************************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1957128IPR009057Homeodomain-like
PROSITE profilePS5007117.70266126IPR001356Homeobox domain
SMARTSM003892.1E-1969130IPR001356Homeobox domain
CDDcd000861.41E-1871127No hitNo description
PfamPF000465.0E-1771124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2172133IPR009057Homeodomain-like
PRINTSPR000311.5E-697106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.5E-6106122IPR000047Helix-turn-helix motif
PfamPF021833.9E-17126167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDHHRQQSGH LFFDPAACHG NTLFLGGDNP VFQGQGSLLS MEDASSKKRP FFSTSADFYD  60
DEYYDEQLPE KKRRLTAEQV NLLEKSFEAE NKLEPERKTE LAKKLGLQPR QVAVWFQNRR  120
ARCKTKQLER DYDLLKASYD SLRSNYDSAV KENDRLKYEV VSLTEKLEAK EITLAQAENP  180
CTLPTEATAN LLGHEVVNVK AEDRVSTGSA GSAVVDEDSH QLADSGDSYF LANDYPGGVL  240
PGEAMLSEED ERSDDGGGYF TNVFMDQEEE GRLWDGGFGP RLTSWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008795
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299162.11e-117homeobox-leucine zipper protein HAT5
SwissprotQ022831e-85HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A061EJ861e-115A0A061EJ86_THECC; Homeobox-leucine zipper protein HAT5
STRINGLus100087950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-88homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]