PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008629
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 315aa    MW: 34893.9 Da    PI: 5.9042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008629genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.84.9e-40101101101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCaaCk++rrkC+++C lapyfpa++p+ f+n+hklFG++n++k+l++l+ ++r++am+s+++eA++r   Pv G+vg i++lq++++q++ el++++
  Lus10008629  10 ACAACKYQRRKCSSECQLAPYFPANRPEMFRNAHKLFGVRNIVKILEKLDANQRHEAMHSIIWEANIRHLFPVDGCVGYIFRLQREIHQAQIELDAIH 107
                  7**********************************************************************************************999 PP

       DUF260  99 eel 101
                  ++l
  Lus10008629 108 AQL 110
                  875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8129110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3710106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTLKGGTSHA CAACKYQRRK CSSECQLAPY FPANRPEMFR NAHKLFGVRN IVKILEKLDA  60
NQRHEAMHSI IWEANIRHLF PVDGCVGYIF RLQREIHQAQ IELDAIHAQL HIYRQQHHHP  120
FSAADVGDNV DMVPSQLELG MAPPAGAGNA LALFSHDPDP QPFCPAGVVA DASLSPSPVT  180
PDQQHSYSMS SNNVGGLVGG YNNVGFLESK EPVGNSFWLR HNTTYVMHNN NNSTIPSTMA  240
LQSQLLGQQE VVQDYDEIHP FFDTIDDRQS YIDSKEAYDT SSEESLKDTT QSLEHVTENE  300
LKSAAACFSL TSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3061137114LOB family transfactor Ramosa2.1
5ly0_B4e-3061137114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616263.11e-119LOB domain-containing protein 27-like
TrEMBLA0A2C9VPJ51e-117A0A2C9VPJ5_MANES; Uncharacterized protein
STRINGLus100086290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-45LOB domain-containing protein 27