PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008621

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 280aa MW: 29125.7 Da PI: 4.9161

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008621	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	86.1	8.5e-27	1	131	24	127
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg............................. 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s + Lus10008621 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSstlS---Lpshfrsaglgfsssasnfsvqnrrgnfla 95 9********************************************99988756666666553330...144445555666666667777777666666 PP TCP 89 ..........kaaksaakskksqksaasalnlakesrakarararertr 127 + +s + +++a++ ++a ++a e+++ Lus10008621 96 gfgsdpsasgAV-----PSFLNFNQTAAK--------QEAAETAAEEES 131 666654443211.....222222222211........222222222111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.381	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.0E-27	1	144	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008283	Biological Process	cell proliferation
GO:0009735	Biological Process	response to cytokinin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0010029	Biological Process	regulation of seed germination
GO:0010229	Biological Process	inflorescence development
GO:0031347	Biological Process	regulation of defense response
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG 60 SSTLSLPSHF RSAGLGFSSS ASNFSVQNRR GNFLAGFGSD PSASGAVPSF LNFNQTAAKQ 120 EAAETAAEEE SEEGGSKRRS NTQRFDLMTS NSNTVSHQQQ MGMGGGYNLL QSTSAGAIPA 180 AAANFWMGGD PVWTFPTVAN NSGLHFMNFP GGPMAFLPPS GQEGGGGAGQ FNMFTGLMTS 240 SAAAQYRHHH TAAAEESEAS GSRQGGGGRE RQEDDEDES*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00396	DAP	Transfer from AT3G47620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008621

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890580.1	5e-67	transcription factor TCP14-like, partial
Swissprot	Q93Z00	5e-37	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A1S4A6U8	1e-61	A0A1S4A6U8_TOBAC; transcription factor TCP14-like
TrEMBL	A0A1U7Y6K3	1e-61	A0A1U7Y6K3_NICSY; transcription factor TCP14-like
STRING	Lus10008621	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-28	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Link Out ? help Back to Top
Phytozome	Lus10008621

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]