PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 15257.4 Da PI: 7.3561 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.5 | 1.8e-16 | 15 | 114 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld..gr.sefel 92 ffk+ + +lk + l++p++f++++g + + + tl ++g +W++k+ + +++r +++++GW+ F++ L g+f+ F+++ ++ s+ e+ Lus10008460 15 FFKII-RRESLKDKKLMIPREFVRQCGRD--LKGKATLLAPDGLRWDMKIVKDDGDDRnlkFWFKNGWQAFAEYYSLSHGEFISFQYNggRNtSSLEF 109 66666.666777778***********877..4458***************88666666788*************************995233455555 PP EEEEE CS B3 93 vvkvf 97 +++f Lus10008460 110 SITIF 114 55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-18 | 12 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-19 | 14 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.294 | 14 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-11 | 15 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.61E-15 | 15 | 115 | No hit | No description |
Pfam | PF02362 | 1.5E-13 | 15 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEFPREEDIV QPLKFFKIIR RESLKDKKLM IPREFVRQCG RDLKGKATLL APDGLRWDMK 60 IVKDDGDDRN LKFWFKNGWQ AFAEYYSLSH GEFISFQYNG GRNTSSLEFS ITIFDEKAEK 120 ERDYPSME* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10008460 | 3e-90 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 4e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008460 |