PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 89aa MW: 9504.84 Da PI: 7.5183 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 54.3 | 5.5e-17 | 1 | 55 | 24 | 83 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 ++a+ca r eLG++ d++tieWLlqqa+p i+++tgt++++a+++ ++ +ss+s Lus10008444 1 MPATCASR------ELGHKFDGETIEWLLQQAEPTIIAATGTGTIPANFStMNVWLRSSGS 55 77888866......*********************************88864444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 11.067 | 1 | 33 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.5E-16 | 8 | 60 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MPATCASREL GHKFDGETIE WLLQQAEPTI IAATGTGTIP ANFSTMNVWL RSSGSTLSAP 60 ASNMGYYRRL LLQPHFNPPS TLLPSVSV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008444 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901654.1 | 3e-28 | transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 1e-26 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A2U1PFL0 | 1e-27 | A0A2U1PFL0_ARTAN; Transcription factor, TCP | ||||
STRING | Lus10008444 | 6e-59 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-18 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008444 |
Publications ? help Back to Top | |||
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