PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 534aa MW: 58947.7 Da PI: 5.6089 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 310.1 | 4.9e-95 | 131 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkf 93 lv+lL+++Aea++ +++ la+ +L rl+el+sp+ ++m+Rlaa f+ AL+ l + +++ ++ + +++ +++++aa++l++++sP++kf Lus10008316 131 LVHLLMAAAEALTGpaKSNDLARVILVRLKELVSPNHgSNMERLAAQFADALNFLLDGGGNKHSANVYHGGGCRDEygQADVMAAFQLLQDMSPYVKF 228 68**********97547788************8876549*****************996666655554333333333599****************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlva 183 +h+taNqaIleav +++r+Hi+D+di++G+QW++Llq+L sR+egpp +lRiT++ + s+ s +++etg+rL fA+++g pf+f+ Lus10008316 229 GHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLLQSLVSRKEGPPtpHLRITALTRGGSSnavnrrSIGTVQETGRRLVAFAASIGQPFSFHQCRL 326 *******************************************887666*******9866556788888999***********************999 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFlerflealeyysalfds 270 ++ e++++++ ++ +gEal+ n++l+l ++ +s ++ ++L+ + l+P++v+++e+e+ +++ +Fl rf+++l++ysa++ds Lus10008316 327 DSDESFRPSAVKLVRGEALVLNCMLHLPHFTYRSPKSVA---SFLNGARLLNPRLVTLAEEELGPTEKthtsghsgsgdDFLSRFMDTLHHYSAVYDS 421 9****************************9977776666...9*******************66544445667888888******************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367 lea++p + ++r+ vEr++lg++i+ +a + r ++e+ ++W e+l++aGF+ +s + +qaklll ++ dgyrvee + lvlgWk+r+L Lus10008316 422 LEAGFPMQGRARALVERVFLGPRISGSLARIYRGR--EKEEGGSWWEWLTAAGFRREGVSFANHCQAKLLLGLFN-DGYRVEEMgCNRLVLGWKSRRL 516 ******************************99984..456689********************************.******98578999******** PP GRAS 368 vsvSaWr 374 +s+S W+ Lus10008316 517 LSASIWT 523 ******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.618 | 105 | 503 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-92 | 131 | 523 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MAAINGFHYH HDHLDLSSHT SSTTTTTRTT TTTTDDDTYK WDQGWSPVVD WEVLSGGHHD 60 DFHHLLIDSM LEDESSEDSA NGFSPAVTTP TAAVTTSGDD FSAENMMIVG EEEEEEEVEE 120 REEEDFKGLR LVHLLMAAAE ALTGPAKSND LARVILVRLK ELVSPNHGSN MERLAAQFAD 180 ALNFLLDGGG NKHSANVYHG GGCRDEYGQA DVMAAFQLLQ DMSPYVKFGH FTANQAILEA 240 VTHDRRIHIV DYDIMEGIQW ASLLQSLVSR KEGPPTPHLR ITALTRGGSS NAVNRRSIGT 300 VQETGRRLVA FAASIGQPFS FHQCRLDSDE SFRPSAVKLV RGEALVLNCM LHLPHFTYRS 360 PKSVASFLNG ARLLNPRLVT LAEEELGPTE KTHTSGHSGS GDDFLSRFMD TLHHYSAVYD 420 SLEAGFPMQG RARALVERVF LGPRISGSLA RIYRGREKEE GGSWWEWLTA AGFRREGVSF 480 ANHCQAKLLL GLFNDGYRVE EMGCNRLVLG WKSRRLLSAS IWTPPSVSDS ESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-50 | 115 | 526 | 4 | 382 | Protein SCARECROW |
5b3h_A | 4e-50 | 115 | 526 | 3 | 381 | Protein SCARECROW |
5b3h_D | 4e-50 | 115 | 526 | 3 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008316 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601913.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 0.0 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A2C9U126 | 0.0 | A0A2C9U126_MANES; Uncharacterized protein | ||||
STRING | Lus10008316 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6264 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-151 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008316 |
Publications ? help Back to Top | |||
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