PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008285
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 555aa    MW: 61993.7 Da    PI: 4.8268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008285genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-5291401127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ s+ 
  Lus10008285   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-EVIPEIDVCKWEPWDLPglSVIKNDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIRSRr 105
                  699************************999.99***************6447788888**************************************97 PP

          NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +   +g+kktLvfy+grapkge+++W+mheyr
  Lus10008285 106 pgsTPVSIGMKKTLVFYRGRAPKGERSNWIMHEYR 140
                  6555555***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-593164IPR003441NAC domain
PROSITE profilePS5100555.8769164IPR003441NAC domain
PfamPF023652.5E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAVISMQSLP LGFRFRPTDE ELINHYLRLK INGRDSEVEV IPEIDVCKWE PWDLPGLSVI  60
KNDDPEWFFF CPRDRKYPNG HRSNRATEAG YWKATGKDRT IRSRRPGSTP VSIGMKKTLV  120
FYRGRAPKGE RSNWIMHEYR PTLEDLDGTG PGQAPFVLFR LFRKPEEKVD VVKYDEVEQT  180
GYSPTTTKSS PDEATSDLVQ ETATSSMRGG KPSDTLLDCM TPTTALVPAD SSCNSHMNSD  240
VEDHVTELTV EEANALVDGS SHPYEFTSGE VDYKMFSPMQ PHPYGDLGLN FDSHYDNDFG  300
NDLNGFQFQD GTSEQDVSLT ELLDEVFHND DLSFEEASSD KNLGLLPESF HVRNWELHNN  360
MDAKMAQAQT RFLNAEAGSR NINDNRNSFV MQATHPANYA TNTSFGMSHP VENSVSIDND  420
GGTGIKIRTR QPRARASDNF VGQGTAARRL RLQSRLGDTS CVEDEDEVQS TLTEGQDGKE  480
GDEAIRDDQM KEGPVVKQNI RLRLKGNDKS EHGGSICQSY EKNGSAIRSR WVIGLSGVVF  540
LVAGMVGICR CLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-42814014139Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674121.10.0protein NTM1-like 9
TrEMBLR4NEW20.0R4NEW2_JATCU; NAC transcription factor 055
STRINGLus100082850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-138NAC transcription factor-like 9