PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 123aa MW: 14360.7 Da PI: 10.1395 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.7 | 1.4e-13 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ien+s +v++ k + g++KK ELS+LC+++++ ii Lus10007711 11 IENESSMKVSLKKWKRGLMKKVRELSTLCEIQACAIINK 49 9**********************************9954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.624 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-11 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-16 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-12 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MTRNKAKLVC IENESSMKVS LKKWKRGLMK KVRELSTLCE IQACAIINKP YDEAQTSETW 60 PPTLGRVHQG LTCFKNMPNM EQPKNMINRE EFLANRIEKT REHINKYDRD NHQKAVIHYR 120 TG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007711 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376202.1 | 4e-32 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0A0LVS3 | 1e-29 | A0A0A0LVS3_CUCSA; Uncharacterized protein | ||||
STRING | Lus10007711 | 1e-87 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-21 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007711 |