PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007613
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 327aa    MW: 36029.6 Da    PI: 7.3617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007613genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-062202571254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Lus10007613 220 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 257
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.189208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-11218274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-6218261No hitNo description
Gene3DG3DSA:4.10.280.101.7E-8222262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGFGVGVSSS SPSSEDWNQR QQLGSGNYNS TSMLEDEMNS CGRPLNHNLS GLTNDFSSNP  60
IHGYPIQGLF ESDSQQNPIF VNNFPSSSTT YGTGNSLLLN GLSPSWSKFQ NPNHQNDNHH  120
QDHLRFSNGV MPFWNNQAAT QTDSIRTGYA PTQTRFVAPA FDEKPTSCPS SSSTKSKKEE  180
ATNNTTKESK PKTKKETGSE SSFKRPRIET PSSLPTFKVR KEKLGDRITA LQQLVSPFGK  240
TDTASVLHEA IEYIKFLHDQ VGVLSTPYMK NGNPIQHHSQ GCDKLDQNEQ DLRSRGLCLV  300
PISSTFPVAH ETTADFWTPT FGGSFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021661223.15e-89transcription factor bHLH112
SwissprotQ94JL31e-57BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A2K2AP187e-87A0A2K2AP18_POPTR; Uncharacterized protein
TrEMBLA0A3N7ERD21e-86A0A3N7ERD2_POPTR; Uncharacterized protein
STRINGLus100076130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]