PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 31069.4 Da PI: 8.6643 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 216 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg F + +L+ H ++ H Lus10007540 216 VCPQCGSKFASVTSLVEHVQKvH 238 6******************9988 PP | |||||||
2 | zf-C2H2 | 18.6 | 5e-06 | 253 | 275 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Lus10007540 253 VCPKCSKGFRDPVDLVAHVERdH 275 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 5.89E-13 | 6 | 51 | No hit | No description |
PROSITE profile | PS51039 | 7.872 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.8E-11 | 10 | 52 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.1E-6 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 4.5E-14 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.7E-11 | 90 | 144 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 5.76E-9 | 93 | 143 | No hit | No description |
PROSITE profile | PS51039 | 7.901 | 98 | 146 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.039 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.5E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 10.18 | 215 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0099 | 215 | 238 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.57E-5 | 216 | 271 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 217 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 252 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.4 | 252 | 275 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 254 | 275 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGTPAFPDLG KHCFVEDCKQ LDFLPFTCDR CRQVFCLQHR SYIKHNCPTA DKNNVTVVVC 60 PLCAKGVRLI GNEDPNISWE THVNTECDPS NYEKVTKKPK CPVKGCRESL TFSNTIKCRD 120 CTKDHCLKHR FGLDHNCPGP KKPDPGFQFM SLLNRSNTQN PKTKRPSTST SSSWTSNFFS 180 AAEAGVSKLS RDLSQVWQTT PGIVGASSSR GGGDEVCPQC GSKFASVTSL VEHVQKVHEK 240 KQQSRVLKLP VDVCPKCSKG FRDPVDLVAH VERDHGGTSK A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU830879 | 0.0 | EU830879.1 Linum usitatissimum clone LU0018C06 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021662458.1 | 1e-151 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q8VZ42 | 1e-122 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A2C9V9C9 | 1e-149 | A0A2C9V9C9_MANES; Uncharacterized protein | ||||
STRING | Lus10007540 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-123 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007540 |