PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007522
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 437aa    MW: 49428.4 Da    PI: 9.4025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007522genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-18181271199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v +  +l lp +f+++h  +k ++ +++lede+g  ++ k+     sgr  l++GW+ F+ + +L++gD vvF+l++ ++f  +v +fr
  Lus10007522 181 FVKSMVRSHVYSCFWLGLPSQFCASHL-PK-QDSDIILEDENGSIYDTKY----LSGRAGLSGGWRAFALERKLNDGDAVVFQLVEPERF--KVYIFR 270
                  89************************4.33.4559***************....445556***********************9987777..999999 PP

                  S CS
           B3  99 k 99 
                  +
  Lus10007522 271 T 271
                  7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-21174272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-22175271IPR015300DNA-binding pseudobarrel domain
CDDcd100177.62E-27179270No hitNo description
PROSITE profilePS5086313.253181272IPR003340B3 DNA binding domain
PfamPF023626.5E-16181271IPR003340B3 DNA binding domain
SMARTSM010191.4E-23181272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAAMVSEAAT DNSYEEARKL RLEENRKRFQ DLGISDLSRS LSKVSNSPTA ASKQRQPKPR  60
SKPGTALDEF QPRRSSRPRN HITSYVEDVC IINSRIHQFS YHCFFCSPKI DLNLRSLQFQ  120
ADLDLSAKRR RSNGSRLNSS WTSYIARPLE EVVLASFEER ERARKAAERF EQTLPSDHPV  180
FVKSMVRSHV YSCFWLGLPS QFCASHLPKQ DSDIILEDEN GSIYDTKYLS GRAGLSGGWR  240
AFALERKLND GDAVVFQLVE PERFKVYIFR TTSDSDRKPN ADAVVCKESN GDQQSNKRRK  300
VKEDNDDNAA DEEEGAEPTP RRLTGRKTAA KNQMKKNGLA PMEEEDVIKK GETCRRKSGR  360
RSTVASDETN EKSTTLEGGQ TEEHALVPEE QKGKPKPVTD EMSMEEEEAV GVKEAKPTAI  420
KARKKAAPRL FRRKVY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067LLN22e-83A0A067LLN2_JATCU; Uncharacterized protein
TrEMBLF6GU719e-83F6GU71_VITVI; Uncharacterized protein
STRINGLus100075220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-54B3 family protein