PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26365.4 Da PI: 5.2032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + Lus10007503 13 KGSWSPQEDVALIKLVQQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 58 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v+a+ ++G++ W+tI+r ++ gRt++ +k++w++ Lus10007503 67 PFTPAEDAVIVRAHSLHGNK-WATISRLLP-GRTDNAIKNHWNST 109 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.498 | 8 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-30 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.14E-15 | 15 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.339 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-11 | 67 | 110 | No hit | No description |
Pfam | PF00249 | 1.4E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEPPSSSTAD RIKGSWSPQE DVALIKLVQQ HGPRNWSMIS SGIPGRSGKS CRLRWCNQLS 60 PDVQHRPFTP AEDAVIVRAH SLHGNKWATI SRLLPGRTDN AIKNHWNSTL RRKRAAGKNL 120 DFAVPSDSNL ADSEGESGSN KKLCLRLVDD DIGNGSEGEI ITTSLTLCPP GAEEDVAAEE 180 SGEKEKWLKA AAAAAAEEEE SCLLEIMQRM VADEVGSYID RLKAQDGLNL GPNPEPVDRH 240 DP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-39 | 12 | 113 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007503 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866980.1 | 8e-86 | transcription factor MYB77-like | ||||
Swissprot | O23160 | 3e-55 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A067LKB3 | 4e-84 | A0A067LKB3_JATCU; MYB family protein | ||||
STRING | Lus10007503 | 1e-177 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-57 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007503 |
Publications ? help Back to Top | |||
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