PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 37618.2 Da PI: 8.0671 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 8 | 29 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C + F++ L H+++H Lus10007474 8 KCKLCFRAFPNGRALSGHMKSH 29 7********************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 217 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C k F+++ L +H r + Lus10007474 217 KCEKCMKQFRSPKALISHRRIC 238 8*******************87 PP | |||||||
3 | zf-C2H2 | 12.7 | 0.00039 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Lus10007474 260 FQCPYCFKVFGSGQALGGHKRSH 282 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.15 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.993 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0018 | 8 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.57E-6 | 214 | 282 | No hit | No description |
PROSITE profile | PS50157 | 8.517 | 216 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 21 | 216 | 236 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.05 | 217 | 236 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.803 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.071 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-11 | 260 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDGTSRQKCK LCFRAFPNGR ALSGHMKSHS FLHPTFPLLP PRRNQLGHDP DATESSSSSS 60 YSSSEEETEL KLQSIVKSDD VVYGLRENPR KSFRVADPEF SFAGSSSLVQ DRESESAESR 120 KPATGRRSKR TCRKPWGNSD SPVSSVSSDA DEDVAMCLVM LSRDVNNWRR MKKQRFNNNV 180 DVGFEDLKQN GGEIDKEEEE EEVHEMRGIC GKKKKLKCEK CMKQFRSPKA LISHRRICFL 240 INYKGHHHQL RKLQEEERIF QCPYCFKVFG SGQALGGHKR SHLSSRTGSY PSAVDPLPPP 300 PPSPSPPTCS FWDLNLPAAA EEDDEEFSVV YDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 134 | RKPATGRRSKRTCRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007474 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021690429.1 | 3e-71 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2C9WDA0 | 1e-66 | A0A2C9WDA0_MANES; Uncharacterized protein | ||||
STRING | Lus10007474 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 7e-12 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007474 |