PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007318
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 414aa    MW: 46384.8 Da    PI: 4.7271
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007318genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+ + +f++++Lpk+Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
   Lus10007318  14 FLTKTYEMVDDPSSDSIVSWSASNKSFIVWSPPDFSRELLPKFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGQPHLMKNIH 101
                   9********************999***************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10007318 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.17E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDEAQGSSSS LPPFLTKTYE MVDDPSSDSI VSWSASNKSF IVWSPPDFSR ELLPKFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFANEDFV RGQPHLMKNI HRRKPVHSHS MQNIQVQGSA  120
NPLTDAERQS LKHDIARLKH DKEVLVLELQ RKEQERRAFE LQMQALRGKF EELEMRQKTI  180
ASCLTQALKK PGLSLDLMPQ LEGHERKRRL PRISCYDDPM LEDSTQMEMS ACLAGENTDP  240
SCCLALSNSE KVELLESSLT FWENVVNDVS QTTPFIQQTY PSPVEMDECT SCADSPALSL  300
VQLNIDVHPN SPEIDMNSEP NVLVSAELTS PSTEPSPGGT TGSGVNDVFW EQLLTENPGS  360
GVAEEAESEN SDSDGSRRND IIKPIDHGRN WWNIRNVNSL AGHIGPLTPA GRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24910324129Heat shock factor protein 1
5d5v_B2e-24910324129Heat shock factor protein 1
5d5v_D2e-24910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316809.10.0heat stress transcription factor A-4c
SwissprotO494031e-119HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLB9I1G80.0B9I1G8_POPTR; Uncharacterized protein
STRINGLus100073180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-117heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]