PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007188
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 446aa    MW: 50552 Da    PI: 4.755
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007188genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573606.4e-1987184798
       DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv...sksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkifelskkiWgs 98 
                  ws eDei+lL ++i++k++ g++p++++ af ++++ks s++v   +k  l  K+r++Kk +   vk+    ++++ p+fs + +++ f+l+ kiWgs
  Lus10007188  87 WSFEDEISLLNAVIQYKSQIGSDPWSNWAAFLDYIEKSRSLQVkipTKVALAMKVRKFKKDYLSIVKRnesESENQAPVFSDPAERDLFHLCDKIWGS 184
                  ************************************99888884455899*************9999966555667799*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-1787183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAKKNRPIEQ EQEADQLKST PSTSSAKRSP SKAAPQSENV PDSVSSCSSP SLSAFELKPI  60
AVQKASQRKS TPSPPKENKS DDGKGRWSFE DEISLLNAVI QYKSQIGSDP WSNWAAFLDY  120
IEKSRSLQVK IPTKVALAMK VRKFKKDYLS IVKRNESESE NQAPVFSDPA ERDLFHLCDK  180
IWGSGENQNC SLKKVNLGPH MEEDPAKKSR GSEVAKEKEK EALVGVEEDK RKASVNKSNS  240
GIILGLPIEE PPAKKRRRTE AKKQKETRVV MGDDENYSEK GKGKEKEGFV VMVEENGVNE  300
DDDDGEEEEN DANEGEDEKE KNDVNDDVED KENDENEDDD AEEKGKEKEK GKVKETDVVR  360
EKHELYPRVF ASMERRLAFM DKAHDGNVSD LRQVCNEIIE KADEEKLKDW ESRWRTQKKV  420
ELEAFVGRKT LEIEESTEWL DIIQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100071880.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.13e-11DNA-binding storekeeper protein-related transcriptional regulator