PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 28802 Da PI: 4.6868 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 99 | 157 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YY+C+s+gCpvkk+ver+++dp++v++tYeg H+h Lus10006848 99 LDDGYRWRKYGKKMVKNNHNPRNYYKCSSEGCPVKKRVERDRDDPSYVITTYEGLHTHX 157 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-33 | 84 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 92 | 157 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.62 | 94 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-36 | 99 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 100 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSFNFVNNPS PHTSDDQYSY YGDSSNNATS LELSELLSLN EWADERDRDP PNWFTTTVDN 60 APIISVVDGS STATTEDNRS GEVTKERVSF KTKSEVEVLD DGYRWRKYGK KMVKNNHNPR 120 NYYKCSSEGC PVKKRVERDR DDPSYVITTY EGLHTHXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXYFELIDEL 240 LYIFYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 89 | 156 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 89 | 156 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006848 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220527.1 | 8e-44 | PREDICTED: probable WRKY transcription factor 50 isoform X1 | ||||
Refseq | XP_024033930.1 | 8e-44 | probable WRKY transcription factor 50 isoform X1 | ||||
TrEMBL | A0A067GDY4 | 1e-42 | A0A067GDY4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UPS5 | 1e-42 | V4UPS5_9ROSI; Uncharacterized protein | ||||
STRING | Lus10006848 | 1e-110 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-39 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Lus10006848 |