PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10006547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 42808 Da PI: 9.4233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.6e-52 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL+kk+++ ++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + + Lus10006547 14 LPPGFRFHPTDEELILHYLQKKLSSIPFPV-SIIADVDIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLISTFggN 110 79****************************.89***************988899**************************************998667 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kk Lvfykg+ pkg kt+W+mheyrl Lus10006547 111 HNNIGIKKALVFYKGKPPKGIKTNWIMHEYRL 142 778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-64 | 4 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.637 | 14 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MAMMMKRRSP GSSLPPGFRF HPTDEELILH YLQKKLSSIP FPVSIIADVD IYKFDPWDLP 60 AKATFGEKEW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DKLISTFGGN HNNIGIKKAL 120 VFYKGKPPKG IKTNWIMHEY RLSDPPTKYS IKPTRSKGSS MRLDDWVLCR IYKKTHSNSS 180 HNRPDQTSTT TTVSSSDQDH EKEDQNCHQE QLSSQQTLLS FPSSKSPMIN NQHQVTPLMP 240 QKSSSFSNLL DAMDFLSDPQ FSFNSAGFES FPTDSIAYGD GNYLYHKLPQ LQSNNGSTTM 300 APTHMETTTM HSRPKRERSI GNEDFSSMVN PFKKSMVSSR SHDADQDHMA ADDNGFLNYQ 360 MALNQQLLLS HHLQFQG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-77 | 13 | 177 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10006547 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022718970.1 | 1e-122 | NAC transcription factor 47-like | ||||
Swissprot | Q84TD6 | 1e-113 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | B9SHJ8 | 1e-119 | B9SHJ8_RICCO; Transcription factor, putative | ||||
STRING | Lus10006547 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-103 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10006547 |
Publications ? help Back to Top | |||
---|---|---|---|
|