PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006054
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 560aa    MW: 62517.1 Da    PI: 4.5256
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006054genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.22.6e-39251472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkge 98 
                  ppGfrFhPtdeelv +yLk+k+ +++l+l +vi+e+d+yk++P+dLp +++ ++ ++  +  r+ +     r  r    +gyWkatgkd+++++ +++
  Lus10006054  25 PPGFRFHPTDEELVLYYLKRKICRRRLRL-NVIRELDVYKWDPEDLP-ELEVGSGSYSVYEIRSMR--LMIRVYRgGSIQGYWKATGKDRNITC-NSR 117
                  8***************************9.99***************.444433333344444443..456888865669**************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg+kktLvfy+grap+ge+tdWvmhey+l
  Lus10006054 118 SVGVKKTLVFYRGRAPTGERTDWVMHEYTL 147
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-4618170IPR003441NAC domain
PROSITE profilePS5100544.10124170IPR003441NAC domain
PfamPF023651.0E-2025147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MLDTAVSKLA GGGGEGISAG DFKWPPGFRF HPTDEELVLY YLKRKICRRR LRLNVIRELD  60
VYKWDPEDLP ELEVGSGSYS VYEIRSMRLM IRVYRGGSIQ GYWKATGKDR NITCNSRSVG  120
VKKTLVFYRG RAPTGERTDW VMHEYTLDEE ELKRCPNVQD YYALYKVFKK SGPGPKNGEQ  180
YGAPFREEDW LDDETAIVSV PEITVRKINE LPPVCNEKAV PRVEPPRDDL FDMIKEIVEE  240
PRLEPLNVTE FCPIVQVGRK EVTESTMVNP LTRDIPEAGY NYGNSEISEL HSSEAPEVNS  300
AIKWTEDDFL EVNDLFSSEP TVTNAEESSP TVDSLFDSID GLSQFELYHD ATMFLRDMGP  360
LGQQTISQSF GDNMVDQIGH HQYQQPAVNE ANHETQLHQE ANQFDYSSWQ PDQSMLNELQ  420
HLLNDPQGSV PTNDAAPSKL GPETSGAVCD YVSNEDQAAS TTAEDGTAGW FSSAMWNFVD  480
SIPFEPALAA ESPLVNKAMG RMTSFRRLRM NLVDANCVPV ARPNNGAANA RRAGGKKGGL  540
MLMLSVLAVS LAVLWVSIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-31181479140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044813.11e-165PREDICTED: NAC domain-containing protein 69 isoform X1
TrEMBLB9GT491e-161B9GT49_POPTR; Uncharacterized protein
TrEMBLR4NHR31e-162R4NHR3_JATCU; NAC transcription factor 049
STRINGLus100060540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.19e-93NAC domain containing protein 17