PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005966
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 595aa    MW: 65516.6 Da    PI: 6.7995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005966genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13433479455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Lus10005966 433 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 479
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-5255246IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-18432490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-14432483No hitNo description
Gene3DG3DSA:4.10.280.109.5E-18433489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10433479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-17435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKFEVSSRCG GGAWNEEDKA IIAAILGNKA FDHLISKTVS NENLLTTAVT DDDNLQNKLS  60
DLVDRPSSSF SWNYAIFWQI SYSKSGDWVL CWGDGSCREP HGSEPVLGRR VEDDPTKQRM  120
RKRVIHKLQQ LFGGSEDGED DVVDEDYALG LDRVTDTEMF FLASMYFSFP KGEERGPGKA  180
FESGNHIWIS NALNSKSDYC VRSFLARSAG IQTVVLIPTD VGVLELGSVR SVPESVELVQ  240
SMAAHFSSRP RLKPVAIPVQ AAPAVVAMPV VSEKKKDEIN SGFGNLGFVE RIEAIPQKIF  300
GQDFNRSNNN NHHHHHGYRE KLAVRKMEER PPVSNPNPAA NWGAKAAANN IQEFGNGVRE  360
EFRISHYPSQ QKQQGQLQID FSSSGSMVVA RPIPSVESEC NSDGEGATPL TKDDKRPRKR  420
GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYINELQA  480
KLKMMEAERG VGTGTGSGTG LIDVDVQASS SNDEVMVRVS CPFDSHPASK VIQAFKEAKI  540
TVIDSKLAAA NETVYHTFVV KAQQGSEQLT KERLMAVFSH ESSNSALQPL STAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29427489264Transcription factor MYC2
5gnj_B1e-29427489264Transcription factor MYC2
5gnj_E1e-29427489264Transcription factor MYC2
5gnj_F1e-29427489264Transcription factor MYC2
5gnj_G1e-29427489264Transcription factor MYC2
5gnj_I1e-29427489264Transcription factor MYC2
5gnj_M1e-29427489264Transcription factor MYC2
5gnj_N1e-29427489264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414422KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005966
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440877.10.0transcription factor bHLH13
RefseqXP_024440878.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2K1XT840.0A0A2K1XT84_POPTR; Uncharacterized protein
STRINGLus100059660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-161bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]