PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005921
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 294aa    MW: 33822.9 Da    PI: 7.8292
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005921genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.22.9e-27182232252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  e +++led++kyF+ pi+ AAke++v+lTvLKr+CR+++I+RWPhRk+ksl
  Lus10005921 182 ERQLELEDIQKYFHVPITRAAKEMKVGLTVLKRRCRELNIMRWPHRKMKSL 232
                  689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.234163254IPR003035RWP-RK domain
PfamPF020421.2E-23185232IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKSCSIASSG LLAASMPSSS SSIVHSQEQV MNNIGTNMIT NHQHQAVMQD YDQPLDLDWS  60
FVEDYFQLDH CVSVEPNNHP EVIKYYSSNN SCCSYGLEGT TVNEWDDQMM MMMINSTGGV  120
VTPTDLLPPY PPSYTYVPTT TDVSKMITMG KNDDVDERSK VVCSNNSSTR GRKRWVGHKN  180
NERQLELEDI QKYFHVPITR AAKEMKVGLT VLKRRCRELN IMRWPHRKMK SLNSLILNVK  240
EMGMMEEELL LLEEHRKLLE KMPDMELTER TKKLRQACFK ANYKKRVLFH LSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100059210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-30RWP-RK domain-containing protein