PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004924
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 206aa    MW: 23640.5 Da    PI: 4.4296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004924genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.7e-1520107698
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  ++ ++l+   + +pk f++e+g +   + t++l+ ++g +W++kl   ++++r+++ +GW +F k   L+ g f++F+++g+ s+f  +v++f+
  Lus10004924  20 MRLHTLSWLTMHIPKWFVDEFGAE--ITDTVVLKLPNGVTWDLKL--FRSGRRIWFNEGWVDFSKFYSLRYGSFLIFQYTGDrSSF--LVTIFK 107
                  466677777899*********866..6679***************..9********************************988999..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1911110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-1912110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-1714107No hitNo description
PROSITE profilePS5086312.67515109IPR003340B3 DNA binding domain
SMARTSM010193.1E-716109IPR003340B3 DNA binding domain
PfamPF023628.3E-1217107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTKQEAANKM TKIPQFCKFM RLHTLSWLTM HIPKWFVDEF GAEITDTVVL KLPNGVTWDL  60
KLFRSGRRIW FNEGWVDFSK FYSLRYGSFL IFQYTGDRSS FLVTIFKPNG SETRYPPRNL  120
ANGLNAGLEA DPAPNVANGS SADRAFEIED DEDEEDPAGN DVETEENEDE DWVPESRRSI  180
PEQCGRELEW LVKSRMLLEL ISLTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100049241e-151(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.19e-20B3 family protein